SMTL ID : 6npp.1

Crystal structure of Epstein-Barr Virus Nuclear Antigen-1, EBNA1, bound to fragments

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KWG: 3-(phenylethynyl)-2-(1H-pyrrol-1-yl)benzoic acid(Non-covalent)

KWG.1: 13 residues within 4Å: Chain B: K.4, N.7, I.8, G.11, S.43, N.46, L.47, L.109, V.110, T.112, K.113, T.117, I.120 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.4, B:I.8, B:I.8, B:L.47, B:L.109, B:L.109, B:L.109, B:K.113, B:T.117 Hydrogen bonds: B:N.46 Water bridges: B:K.4 Salt bridges: B:K.4 pi-Cation interactions: B:K.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messick, T.E. et al., Structure-based design of small-molecule inhibitors of EBNA1 DNA binding blocks Epstein-Barr virus latent infection and tumor growth. Sci Transl Med (2019)

Release Date

2019-03-20

Peptides

Epstein-Barr nuclear antigen 1: A
EBNA1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Epstein-Barr nuclear antigen 1

EBNA1

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