SMTL ID : 6nqu.1

Human LSD1 in complex with GSK2879552

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x KWM: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[(9~{S},11~{R})-15,16-dimethyl-11-oxidanyl-5,7-bis(oxidanylidene)-9-phenyl-2,4,6,12-tetrazabicyclo[11.4.0]heptadeca-1(17),13,15-trien-2-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate(Non-covalent)

KWM.1: 38 residues within 4Å: Chain A: I.112, G.113, S.114, G.115, V.116, S.117, L.135, E.136, A.137, R.138, G.142, G.143, R.144, L.157, G.158, A.159, M.160, V.161, T.163, T.416, A.417, V.418, T.452, L.453, P.454, V.465, L.487, K.489, W.579, W.584, S.588, Y.589, G.628, E.629, A.637, T.638, V.639, A.642 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:T.163, A:Y.589, A:T.638 Hydrogen bonds: A:S.114, A:G.115, A:V.116, A:S.117, A:S.117, A:S.117, A:A.137, A:R.138, A:R.144, A:A.159, A:M.160, A:V.161, A:V.161, A:V.418, A:V.418, A:K.489, A:E.629, A:A.637, A:V.639 Salt bridges: A:R.144, A:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, A.H.Y. et al., Lysine-Specific Histone Demethylase 1A Regulates Macrophage Polarization and Checkpoint Molecules in the Tumor Microenvironment of Triple-Negative Breast Cancer. Front Immunol (2019)

Release Date

2019-02-13

Peptides

Lysine-specific histone demethylase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific histone demethylase 1A

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