SMTL ID : 6nr5.1

Human LSD1 in complex with Phenelzine sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x KXM: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R)-5-[(4aR)-7,8-dimethyl-2,4-dioxo-5-(2-phenylethyl)-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)(Non-covalent)

KXM.1: 38 residues within 4Å: Chain A: I.112, G.113, S.114, G.115, V.116, S.117, L.135, E.136, A.137, R.138, G.142, G.143, R.144, L.157, G.158, A.159, M.160, V.161, F.366, T.416, A.417, V.418, T.452, L.453, P.454, V.465, L.487, K.489, W.579, W.584, S.588, Y.589, G.628, E.629, A.637, T.638, V.639, A.642 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.366, A:W.579, A:Y.589 Hydrogen bonds: A:G.113, A:G.115, A:S.117, A:S.117, A:A.137, A:R.138, A:R.138, A:G.142, A:R.144, A:R.144, A:A.159, A:M.160, A:V.161, A:V.161, A:V.418, A:V.418, A:E.629, A:A.637, A:V.639 Salt bridges: A:R.144, A:R.144 pi-Stacking: A:Y.589

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, A.H.Y. et al., Lysine-Specific Histone Demethylase 1A Regulates Macrophage Polarization and Checkpoint Molecules in the Tumor Microenvironment of Triple-Negative Breast Cancer. Front Immunol (2019)

Release Date

2019-07-17

Peptides

Lysine-specific histone demethylase 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific histone demethylase 1A

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