SMTL ID : 6nr7.1

Rerefinement of chicken vinculin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: K.931, R.1080 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.931, A:R.1080 SO4.2: 4 residues within 4Å: Chain A: E.206, H.207, W.273, D.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.206, A:D.274 Salt bridges: A:H.207

1 x KYG: (1R,2R,3S,4R,5R,6S)-4-{[(S)-[(2S)-2,3-dihydroxypropoxy](hydroxy)phosphoryl]oxy}-3,5,6-trihydroxycyclohexane-1,2-diyl bis[dihydrogen (phosphate)](Non-covalent)

KYG.3: 4 residues within 4Å: Chain A: Q.38, H.42, K.972, K.976 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.38, A:K.976 Salt bridges: A:H.42, A:K.972

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 1 residues within 4Å: Chain A: D.973 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.973 PO4.5: 2 residues within 4Å: Chain A: R.567, Q.570 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.567, A:Q.570 Water bridges: A:Q.570

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stec, D.L. et al., Refined model of chicken vinculin suggests the mechanism of activation by helical super-bundle unfurling. To be published

Release Date

2020-01-29

Peptides

Vinculin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vinculin