SMTL ID : 6ntd.1

Crystal Structure of G12V HRas-GppNHp bound in complex with the engineered RBD variant 12 of CRAF Kinase protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.22, T.40, D.62 Ligands: GNP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.22, A:T.40

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 26 residues within 4Å: Chain A: A.16, V.17, G.18, V.19, G.20, K.21, S.22, A.23, F.33, V.34, D.35, E.36, Y.37, D.38, P.39, T.40, D.62, T.63, N.121, K.122, D.124, L.125, S.150, A.151, K.152 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:V.17, A:V.19, A:G.20, A:K.21, A:K.21, A:K.21, A:S.22, A:S.22, A:S.22, A:A.23, A:D.35, A:E.36, A:T.40, A:T.40, A:N.121, A:K.122, A:K.122, A:S.150, A:A.151, A:K.152 Salt bridges: A:D.124 pi-Stacking: A:F.33, A:F.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiechmann, S. et al., Conformation-specific inhibitors of activated Ras GTPases reveal limited Ras dependency of patient-derived cancer organoids. J.Biol.Chem. (2020)

Release Date

2020-03-04

Peptides

GTPase HRas: A
RAF proto-oncogene serine/threonine-protein kinase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTPase HRas

RAF proto-oncogene serine/threonine-protein kinase

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