SMTL ID : 6nun.1

Structure of GH32 hydrolase from Bifidobacterium adolescentis in complex with frutose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.53, W.78, W.318, F.322 Ligands: FRU.6 No protein-ligand interaction detected (PLIP) EDO.2: 4 residues within 4Å: Chain A: F.265, M.266, R.428, T.445 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.428, A:R.428, A:T.445, A:T.445 EDO.3: 5 residues within 4Å: Chain A: F.60, Y.61, K.62, G.63, I.119 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.62, A:G.63 Water bridges: A:K.62, A:K.62, A:K.62, A:K.62 EDO.4: 10 residues within 4Å: Chain A: F.43, H.44, I.45, M.91, W.94, Y.316, L.339, P.340, M.359, I.515 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.43, A:Y.316, A:Y.316 Water bridges: A:I.45 EDO.5: 6 residues within 4Å: Chain A: S.114, D.181, P.182, C.236, P.237, Q.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.182, A:Q.305 Water bridges: A:P.55, A:P.304

1 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.6: 13 residues within 4Å: Chain A: N.53, D.54, Q.70, W.78, M.81, F.113, S.114, R.180, D.181, E.235, Y.302, W.318 Ligands: EDO.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.53, A:W.78, A:S.114, A:D.181, A:E.235, A:E.235 Water bridges: A:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lima, M.Z.T. et al., Structure of GH32 from Bifidobacterium adolescentis in complex with fructose. To Be Published

Release Date

2020-02-05

Peptides

Beta-fructofuranosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-fructofuranosidase

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