SMTL ID : 6nux.1

CD1a-lipid binary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FOF: (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol(Non-covalent)

FOF.1: 11 residues within 4Å: Chain A: F.7, V.9, W.11, F.67, T.71, S.74, V.95, G.97, L.158, L.159, T.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.7, A:V.9, A:W.11, A:F.67, A:V.95, A:L.159, A:T.162 Hydrogen bonds: A:S.74, A:S.74

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: V.182, K.183, E.185, G.207 Chain B: R.12, H.13 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.12, B:R.12, A:E.185 EDO.3: 6 residues within 4Å: Chain A: G.230, D.231, L.233, L.242, R.243 Chain B: Q.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.231, A:R.243 EDO.4: 6 residues within 4Å: Chain A: H.8, I.10, W.28 Chain B: S.55, F.56, Y.63 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.55, B:Y.63, B:Y.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nicolai, S. et al., Human T cell response to CD1a and contact dermatitis allergens in botanical extracts and commercial skin care products. Sci Immunol (2020)

Release Date

2020-01-15

Peptides

CD1A protein: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CD1A protein

Beta-2-microglobulin