- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x CO: COBALT (II) ION(Non-covalent)
CO.2: 4 residues within 4Å:- Chain A: D.168, E.198, H.307
- Ligands: ZN.1
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.168, A:E.198, A:E.198, A:H.307, H2O.11
CO.10: 4 residues within 4Å:- Chain B: D.168, E.198, H.307
- Ligands: ZN.9
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.168, B:E.198, B:E.198, B:H.307, H2O.26
CO.20: 4 residues within 4Å:- Chain C: D.168, E.198, H.307
- Ligands: ZN.19
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.168, C:E.198, C:E.198, C:H.307, H2O.39
CO.27: 5 residues within 4Å:- Chain D: D.168, E.198, H.307
- Ligands: ZN.26, OH.34
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Ligand interactions- Metal complexes: D:D.168, D:E.198, D:E.198, D:H.307, OH.34
CO.36: 4 residues within 4Å:- Chain E: D.168, E.198, H.307
- Ligands: ZN.35
5 PLIP interactions:4 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.168, E:E.198, E:E.198, E:H.307, H2O.68
CO.44: 4 residues within 4Å:- Chain F: D.168, E.198, H.307
- Ligands: ZN.43
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.168, F:E.198, F:E.198, F:H.307, H2O.83
CO.54: 4 residues within 4Å:- Chain G: D.168, E.198, H.307
- Ligands: ZN.53
5 PLIP interactions:4 interactions with chain G, 1 Ligand-Water interactions- Metal complexes: G:D.168, G:E.198, G:E.198, G:H.307, H2O.96
CO.61: 5 residues within 4Å:- Chain H: D.168, E.198, H.307
- Ligands: ZN.60, OH.68
5 PLIP interactions:4 interactions with chain H, 1 Ligand-Ligand interactions- Metal complexes: H:D.168, H:E.198, H:E.198, H:H.307, OH.68
CO.70: 4 residues within 4Å:- Chain I: D.168, E.198, H.307
- Ligands: ZN.69
5 PLIP interactions:4 interactions with chain I, 1 Ligand-Water interactions- Metal complexes: I:D.168, I:E.198, I:E.198, I:H.307, H2O.124
CO.78: 4 residues within 4Å:- Chain J: D.168, E.198, H.307
- Ligands: ZN.77
5 PLIP interactions:4 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:D.168, J:E.198, J:E.198, J:H.307, H2O.139
CO.88: 4 residues within 4Å:- Chain K: D.168, E.198, H.307
- Ligands: ZN.87
5 PLIP interactions:4 interactions with chain K, 1 Ligand-Water interactions- Metal complexes: K:D.168, K:E.198, K:E.198, K:H.307, H2O.153
CO.95: 5 residues within 4Å:- Chain L: D.168, E.198, H.307
- Ligands: ZN.94, OH.102
5 PLIP interactions:4 interactions with chain L, 1 Ligand-Ligand interactions- Metal complexes: L:D.168, L:E.198, L:E.198, L:H.307, OH.102
- 75 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.4: 4 residues within 4Å:- Chain A: G.40
- Chain E: S.254, K.255, R.256
Ligand excluded by PLIPSO4.5: 4 residues within 4Å:- Chain A: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.6: 1 residues within 4Å:- Chain A: R.327
Ligand excluded by PLIPSO4.7: 2 residues within 4Å:- Chain A: K.271, Y.272
Ligand excluded by PLIPSO4.8: 4 residues within 4Å:- Chain A: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain B: S.254, K.255, R.256
Ligand excluded by PLIPSO4.12: 5 residues within 4Å:- Chain B: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.13: 3 residues within 4Å:- Chain B: K.48, R.182, I.183
Ligand excluded by PLIPSO4.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSO4.15: 3 residues within 4Å:- Chain B: D.72, D.73, R.136
Ligand excluded by PLIPSO4.16: 1 residues within 4Å:- Chain B: R.327
Ligand excluded by PLIPSO4.17: 4 residues within 4Å:- Chain B: K.53, E.215, R.256, N.260
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain B: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.21: 5 residues within 4Å:- Chain C: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain C: K.271, Y.272
Ligand excluded by PLIPSO4.23: 5 residues within 4Å:- Chain C: S.254, K.255, R.256
- Chain D: E.19, G.40
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain C: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.25: 4 residues within 4Å:- Chain C: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.28: 4 residues within 4Å:- Chain D: K.2, R.6, V.156, E.157
Ligand excluded by PLIPSO4.29: 3 residues within 4Å:- Chain D: D.72, D.73, R.136
Ligand excluded by PLIPSO4.30: 3 residues within 4Å:- Chain D: I.270, K.271, Y.272
Ligand excluded by PLIPSO4.31: 4 residues within 4Å:- Chain B: G.40
- Chain D: S.254, K.255, R.256
Ligand excluded by PLIPSO4.32: 3 residues within 4Å:- Chain D: G.200, L.201, M.285
Ligand excluded by PLIPSO4.33: 4 residues within 4Å:- Chain D: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.37: 5 residues within 4Å:- Chain E: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.38: 4 residues within 4Å:- Chain E: G.40
- Chain I: S.254, K.255, R.256
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain E: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.40: 1 residues within 4Å:- Chain E: R.327
Ligand excluded by PLIPSO4.41: 2 residues within 4Å:- Chain E: K.271, Y.272
Ligand excluded by PLIPSO4.42: 4 residues within 4Å:- Chain E: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.45: 3 residues within 4Å:- Chain F: S.254, K.255, R.256
Ligand excluded by PLIPSO4.46: 5 residues within 4Å:- Chain F: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.47: 3 residues within 4Å:- Chain F: K.48, R.182, I.183
Ligand excluded by PLIPSO4.48: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSO4.49: 3 residues within 4Å:- Chain F: D.72, D.73, R.136
Ligand excluded by PLIPSO4.50: 1 residues within 4Å:- Chain F: R.327
Ligand excluded by PLIPSO4.51: 4 residues within 4Å:- Chain F: K.53, E.215, R.256, N.260
Ligand excluded by PLIPSO4.52: 4 residues within 4Å:- Chain F: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.55: 5 residues within 4Å:- Chain G: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.56: 2 residues within 4Å:- Chain G: K.271, Y.272
Ligand excluded by PLIPSO4.57: 5 residues within 4Å:- Chain G: S.254, K.255, R.256
- Chain H: E.19, G.40
Ligand excluded by PLIPSO4.58: 4 residues within 4Å:- Chain G: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.59: 4 residues within 4Å:- Chain G: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.62: 4 residues within 4Å:- Chain H: K.2, R.6, V.156, E.157
Ligand excluded by PLIPSO4.63: 3 residues within 4Å:- Chain H: D.72, D.73, R.136
Ligand excluded by PLIPSO4.64: 3 residues within 4Å:- Chain H: I.270, K.271, Y.272
Ligand excluded by PLIPSO4.65: 4 residues within 4Å:- Chain F: G.40
- Chain H: S.254, K.255, R.256
Ligand excluded by PLIPSO4.66: 3 residues within 4Å:- Chain H: G.200, L.201, M.285
Ligand excluded by PLIPSO4.67: 4 residues within 4Å:- Chain H: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.71: 5 residues within 4Å:- Chain I: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.72: 4 residues within 4Å:- Chain A: S.254, K.255, R.256
- Chain I: G.40
Ligand excluded by PLIPSO4.73: 4 residues within 4Å:- Chain I: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.74: 1 residues within 4Å:- Chain I: R.327
Ligand excluded by PLIPSO4.75: 2 residues within 4Å:- Chain I: K.271, Y.272
Ligand excluded by PLIPSO4.76: 4 residues within 4Å:- Chain I: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.79: 3 residues within 4Å:- Chain J: S.254, K.255, R.256
Ligand excluded by PLIPSO4.80: 5 residues within 4Å:- Chain J: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.81: 3 residues within 4Å:- Chain J: K.48, R.182, I.183
Ligand excluded by PLIPSO4.82: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPSO4.83: 3 residues within 4Å:- Chain J: D.72, D.73, R.136
Ligand excluded by PLIPSO4.84: 1 residues within 4Å:- Chain J: R.327
Ligand excluded by PLIPSO4.85: 4 residues within 4Å:- Chain J: K.53, E.215, R.256, N.260
Ligand excluded by PLIPSO4.86: 4 residues within 4Å:- Chain J: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.89: 5 residues within 4Å:- Chain K: K.2, R.6, F.155, V.156, E.157
Ligand excluded by PLIPSO4.90: 2 residues within 4Å:- Chain K: K.271, Y.272
Ligand excluded by PLIPSO4.91: 5 residues within 4Å:- Chain K: S.254, K.255, R.256
- Chain L: E.19, G.40
Ligand excluded by PLIPSO4.92: 4 residues within 4Å:- Chain K: V.71, D.72, D.73, R.136
Ligand excluded by PLIPSO4.93: 4 residues within 4Å:- Chain K: M.1, K.2, E.3, L.4
Ligand excluded by PLIPSO4.96: 4 residues within 4Å:- Chain L: K.2, R.6, V.156, E.157
Ligand excluded by PLIPSO4.97: 3 residues within 4Å:- Chain L: D.72, D.73, R.136
Ligand excluded by PLIPSO4.98: 3 residues within 4Å:- Chain L: I.270, K.271, Y.272
Ligand excluded by PLIPSO4.99: 4 residues within 4Å:- Chain J: G.40
- Chain L: S.254, K.255, R.256
Ligand excluded by PLIPSO4.100: 3 residues within 4Å:- Chain L: G.200, L.201, M.285
Ligand excluded by PLIPSO4.101: 4 residues within 4Å:- Chain L: M.1, K.2, E.3, L.4
Ligand excluded by PLIP- 3 x OH: HYDROXIDE ION(Non-covalent)
OH.34: 7 residues within 4Å:- Chain D: H.60, D.168, E.197, E.198, D.220
- Ligands: ZN.26, CO.27
2 PLIP interactions:2 interactions with chain D- Water bridges: D:D.168, D:G.281
OH.68: 7 residues within 4Å:- Chain H: H.60, D.168, E.197, E.198, D.220
- Ligands: ZN.60, CO.61
2 PLIP interactions:2 interactions with chain H- Water bridges: H:D.168, H:G.281
OH.102: 7 residues within 4Å:- Chain L: H.60, D.168, E.197, E.198, D.220
- Ligands: ZN.94, CO.95
2 PLIP interactions:2 interactions with chain L- Water bridges: L:D.168, L:G.281
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dutoit, R. et al., How metal cofactors drive dimer-dodecamer transition of the M42 aminopeptidase TmPep1050 ofThermotoga maritima. J.Biol.Chem. (2019)
- Release Date
- 2019-10-23
- Peptides
- Aminopeptidase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x ZN: ZINC ION(Non-covalent)
- 12 x CO: COBALT (II) ION(Non-covalent)
- 75 x SO4: SULFATE ION(Non-functional Binders)
- 3 x OH: HYDROXIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dutoit, R. et al., How metal cofactors drive dimer-dodecamer transition of the M42 aminopeptidase TmPep1050 ofThermotoga maritima. J.Biol.Chem. (2019)
- Release Date
- 2019-10-23
- Peptides
- Aminopeptidase: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
DI
AJ
BK
CL
D