SMTL ID : 6ny5.1

Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.6, Q.213, S.214, R.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.215 Salt bridges: A:R.6 SO4.2: 3 residues within 4Å: Chain A: S.157, T.158, E.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.159 SO4.3: 4 residues within 4Å: Chain A: R.7, R.12, S.13, R.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.13 Salt bridges: A:R.7, A:R.206, A:H.207 SO4.4: 6 residues within 4Å: Chain B: R.7, R.12, S.13, L.16, R.206, H.207 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.13 Salt bridges: B:R.7, B:R.206, B:H.207 SO4.5: 2 residues within 4Å: Chain B: T.158, E.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.159

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.6: 2 residues within 4Å: Chain C: C.8, A.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, C. et al., Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res. (2019)

Release Date

2019-07-03

Peptides

Pumilio domain-containing protein C56F2.08c: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pumilio domain-containing protein C56F2.08c