SMTL ID : 6ny7.1

Crystal Structure of NDM-1 D199N with Compound 16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.83, H.85, H.152 Ligands: L8J.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.83, A:H.85, A:H.152, H2O.1, H2O.2 ZN.2: 4 residues within 4Å: Chain A: D.87, C.171, H.213 Ligands: L8J.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.87, A:C.171, A:H.213

1 x L8J: [(5,7-dibromo-2-oxo-1,2-dihydroquinolin-4-yl)methyl]phosphonic acid(Non-covalent)

L8J.3: 9 residues within 4Å: Chain A: M.30, V.36, D.87, H.152, C.171, N.183, H.213 Ligands: ZN.1, ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.183 Water bridges: A:K.174, A:N.183, A:N.183, A:N.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pemberton, O.A. et al., Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases. J.Med.Chem. (2019)

Release Date

2019-09-25

Peptides

Carbapenem Hydrolyzing Class B Metallo beta lactamase NDM-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbapenem Hydrolyzing Class B Metallo beta lactamase NDM-1

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