SMTL ID : 6nyh.2 (1 other biounit)

Structure of human RIPK1 kinase domain in complex with GNE684

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x L8D: (5S)-N-[(3S)-7-methoxy-1-methyl-2-oxo-2,3,4,5-tetrahydro-1H-pyrido[3,4-b]azepin-3-yl]-5-phenyl-6,7-dihydro-5H-pyrrolo[1,2-b][1,2,4]triazole-2-carboxamide(Non-covalent)

L8D.1: 18 residues within 4Å: Chain A: I.45, K.47, M.69, L.72, V.77, V.78, L.80, L.92, M.94, L.131, H.138, I.156, A.157, D.158, L.159, L.161, S.163, F.164 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.47, A:L.72, A:L.72, A:V.77, A:L.80, A:L.92, A:L.131, A:L.159, A:L.161 Hydrogen bonds: A:D.158

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: A.233, I.234 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: K.286, F.287 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: E.284, R.288 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, S. et al., RIP1 inhibition blocks inflammatory diseases but not tumor growth or metastases. Cell Death Differ. (2020)

Release Date

2019-05-29

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Receptor-interacting serine/threonine-protein kinase 1

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