SMTL ID : 6nyt.1

Munc13-1 C2B-domain, calcium bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.33, D.39, D.85, E.86, D.87 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.33, A:D.39, A:D.85, A:E.86, H2O.5 CA.2: 6 residues within 4Å: Chain A: K.32, D.33, D.85, D.87, D.104 Ligands: CA.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:K.32, A:D.33, A:D.85, A:D.104, H2O.5

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: K.32, F.105, S.133, A.134 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: K.51, F.68, H.69 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: E.1, F.2, Y.41, T.43, K.50, W.84, E.101, S.102, D.103 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.1, A:K.50, A:S.102, A:D.103, A:D.103 Water bridges: A:W.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, O.H. et al., Munc13 C2B domain is an activity-dependent Ca2+ regulator of synaptic exocytosis. Nat. Struct. Mol. Biol. (2010)

Release Date

2019-02-20

Peptides

Protein unc-13 homolog A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein unc-13 homolog A

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