SMTL ID : 6nz0.3 (3 other biounits)

Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.99, A:D.128, A:D.129, A:D.174, A:D.174 MG.2: 6 residues within 4Å: Chain C: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:R.99, C:D.128, C:D.129, C:D.174, C:D.174 MG.3: 6 residues within 4Å: Chain E: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:R.99, E:D.128, E:D.129, E:D.174, E:D.174 MG.4: 6 residues within 4Å: Chain G: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:R.99, G:D.128, G:D.129, G:D.174, G:D.174 MG.5: 6 residues within 4Å: Chain I: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:R.99, I:D.128, I:D.129, I:D.174, I:D.174 MG.6: 6 residues within 4Å: Chain K: N.98, R.99, D.128, D.129, D.130, D.174 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:R.99, K:D.128, K:D.129, K:D.174, K:D.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, N.L. et al., Structure of the gene therapy vector, adeno-associated virus with its cell receptor, AAVR. Elife (2019)

Release Date

2019-06-12

Peptides

Dyslexia-associated protein KIAA0319-like protein: ACEGIK
Capsid protein VP1: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

C
Z

E
Z

G
Z

I
Z

K
Z

B
A

D
A

F
A

H
A

J
A

L
A

Dyslexia-associated protein KIAA0319-like protein

Capsid protein VP1

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