SMTL ID : 6nz7.2 (1 other biounit)

Crystal structure of broadly neutralizing Influenza A antibody 429 B01 in complex with Hemagglutinin Hong Kong 1968

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: T.30, N.31 Chain C: T.101, F.103, G.104 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:N.31, C:T.101, C:F.103, C:G.104 NAG.2: 5 residues within 4Å: Chain A: Q.73, N.74, E.112, F.113, I.114 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.73 NAG.3: 3 residues within 4Å: Chain A: N.278, V.290, N.291 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.291 NAG.4: 5 residues within 4Å: Chain B: A.144, E.147, S.148, N.151, T.153 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.144, B:E.147, B:S.148, B:N.151, B:N.151 NAG.5: 3 residues within 4Å: Chain C: D.73, N.76, T.78 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsuda, K. et al., Prolonged evolution of the memory B cell response induced by a replicating adenovirus-influenza H5 vaccine. Sci Immunol (2019)

Release Date

2019-05-08

Peptides

Hemagglutinin HA1 chain: A
Hemagglutinin HA2 chain: B
429 B01 FAB heavy chain: C
429 B01 FAB light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
I

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

429 B01 FAB heavy chain

429 B01 FAB light chain

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