SMTL ID : 6nzw.1

LRRC8A-DCPIB in MSP1E3D1 nanodisc constricted state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

18 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)

POV.1: 12 residues within 4Å: Chain A: W.120, Y.124, Y.127, L.128, L.130, L.131 Chain B: I.38, F.41, I.320, L.321, F.324 Ligands: POV.7 Ligand excluded by PLIP POV.2: 6 residues within 4Å: Chain A: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.3: 5 residues within 4Å: Chain A: I.320, S.323, F.324 Chain F: L.131 Ligands: POV.17 Ligand excluded by PLIP POV.5: 12 residues within 4Å: Chain B: W.120, Y.124, Y.127, L.128, L.130, L.131 Chain C: I.38, F.41, I.320, L.321, F.324 Ligands: POV.10 Ligand excluded by PLIP POV.6: 6 residues within 4Å: Chain B: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.7: 5 residues within 4Å: Chain A: L.131 Chain B: I.320, S.323, F.324 Ligands: POV.1 Ligand excluded by PLIP POV.8: 12 residues within 4Å: Chain C: W.120, Y.124, Y.127, L.128, L.130, L.131 Chain D: I.38, F.41, I.320, L.321, F.324 Ligands: POV.13 Ligand excluded by PLIP POV.9: 6 residues within 4Å: Chain C: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.10: 5 residues within 4Å: Chain B: L.131 Chain C: I.320, S.323, F.324 Ligands: POV.5 Ligand excluded by PLIP POV.11: 12 residues within 4Å: Chain D: W.120, Y.124, Y.127, L.128, L.130, L.131 Chain E: I.38, F.41, I.320, L.321, F.324 Ligands: POV.16 Ligand excluded by PLIP POV.12: 6 residues within 4Å: Chain D: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.13: 5 residues within 4Å: Chain C: L.131 Chain D: I.320, S.323, F.324 Ligands: POV.8 Ligand excluded by PLIP POV.14: 12 residues within 4Å: Chain E: W.120, Y.124, Y.127, L.128, L.130, L.131 Chain F: I.38, F.41, I.320, L.321, F.324 Ligands: POV.19 Ligand excluded by PLIP POV.15: 6 residues within 4Å: Chain E: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.16: 5 residues within 4Å: Chain D: L.131 Chain E: I.320, S.323, F.324 Ligands: POV.11 Ligand excluded by PLIP POV.17: 12 residues within 4Å: Chain A: I.38, F.41, I.320, L.321, F.324 Chain F: W.120, Y.124, Y.127, L.128, L.130, L.131 Ligands: POV.3 Ligand excluded by PLIP POV.18: 6 residues within 4Å: Chain F: W.120, L.128, L.131, H.132, Y.281, Y.285 Ligand excluded by PLIP POV.19: 5 residues within 4Å: Chain E: L.131 Chain F: I.320, S.323, F.324 Ligands: POV.14 Ligand excluded by PLIP

1 x L9Y: 4-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}butanoic acid(Non-covalent)

L9Y.4: 6 residues within 4Å: Chain A: R.103 Chain B: R.103 Chain C: R.103 Chain D: R.103 Chain E: R.103 Chain F: R.103 7 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain F, 2 interactions with chain A Salt bridges: E:R.103, C:R.103, D:R.103, F:R.103, A:R.103 Hydrogen bonds: B:R.103, A:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kern, D.M. et al., Cryo-EM structures of the DCPIB-inhibited volume-regulated anion channel LRRC8A in lipid nanodiscs. Elife (2019)

Release Date

2019-02-27

Peptides

Volume-regulated anion channel subunit LRRC8A: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Volume-regulated anion channel subunit LRRC8A

Related Entries With Identical Sequence