SMTL ID : 6o0a.1

Crystal structure of flavohemoglobin from Malassezia yamatoensis with bound FAD and heme determined by iron SAD phasing

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 24 residues within 4Å: Chain A: S.65, R.68, D.69, K.105, Y.207, R.222, Q.223, F.224, T.225, A.237, I.238, K.239, D.241, H.243, G.244, E.245, M.246, T.247, I.288, T.291, E.397, I.398, F.399, G.400 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.207, A:Q.223, A:F.399, A:F.399, A:F.399 Hydrogen bonds: A:S.65, A:Q.223, A:Q.223, A:T.225, A:T.225, A:A.237, A:K.239, A:D.241, A:E.245, A:M.246, A:T.247 Water bridges: A:R.68, A:R.68, A:R.68, A:R.68, A:D.69, A:D.69, A:R.222, A:T.248 Salt bridges: A:R.222, A:R.222 pi-Stacking: A:F.224, A:F.399

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 20 residues within 4Å: Chain A: M.61, F.62, S.63, A.75, L.76, S.79, I.80, R.101, V.102, K.105, H.106, L.109, L.111, E.115, Y.116, V.119, Y.147, L.150, A.151, L.154 24 PLIP interactions: 24 interactions with chain A, Hydrophobic interactions: A:F.62, A:F.62, A:F.62, A:F.62, A:L.76, A:L.76, A:I.80, A:V.102, A:V.102, A:L.109, A:L.111, A:L.111, A:Y.116, A:V.119, A:Y.147, A:L.150, A:L.154 Hydrogen bonds: A:S.63 Water bridges: A:Y.47, A:Q.72, A:K.105 Salt bridges: A:R.101, A:K.105 Metal complexes: A:H.106

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 8 residues within 4Å: Chain A: G.202, K.203, A.204, L.226, L.227, P.228, S.229, E.298 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.226 Hydrogen bonds: A:S.229 Water bridges: A:G.202, A:A.204, A:S.229, A:E.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ianiri, G. et al., HGT in the human and skin commensal Malassezia : A bacterially derived flavohemoglobin is required for NO resistance and host interaction. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2019-03-06

Peptides

Flavohemoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavohemoglobin