SMTL ID : 6o0k.1

crystal structure of BCL-2 with venetoclax

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

1 x LBM: 4-{4-[(4'-chloro-5,5-dimethyl[3,4,5,6-tetrahydro[1,1'-biphenyl]]-2-yl)methyl]piperazin-1-yl}-N-[(3-nitro-4-{[(oxan-4-yl )methyl]amino}phenyl)sulfonyl]-2-[(1H-pyrrolo[2,3-b]pyridin-5-yl)oxy]benzamide(Non-covalent)

LBM.1: 21 residues within 4Å: Chain A: A.59, D.62, F.63, R.66, Y.67, D.70, F.71, M.74, E.95, L.96, N.102, W.103, G.104, R.105, V.107, A.108, E.111, F.112, V.115, F.157, Y.161 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.63, A:F.63, A:F.63, A:Y.67, A:M.74, A:E.95, A:R.105, A:V.107, A:F.112 Hydrogen bonds: A:D.62, A:N.102, A:W.103, A:G.104 Water bridges: A:N.102, A:N.102 Salt bridges: A:D.70

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 6 residues within 4Å: Chain A: R.12, M.16, A.32, D.130, N.131, L.134 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.12 Water bridges: A:N.131, A:N.131, A:L.134, A:L.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birkinshaw, R.W. et al., Structures of BCL-2 in complex with venetoclax reveal the molecular basis of resistance mutations. Nat Commun (2019)

Release Date

2019-05-22

Peptides

Apoptosis regulator Bcl-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apoptosis regulator Bcl-2

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