Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6o15.1
Crystal structure of a putative oxidoreductase YjhC from Escherichia coli in complex with NAD(H)
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.35 Å
Oligo State
homo-dimer
Ligands
3 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
2 residues within 4Å:
Chain A:
G.197
,
R.354
4
PLIP interactions
:
4 interactions with chain A
Water bridges:
A:R.354
,
A:R.354
,
A:R.354
Salt bridges:
A:R.354
SO4.3:
2 residues within 4Å:
Chain B:
G.197
,
R.354
6
PLIP interactions
:
6 interactions with chain B
Water bridges:
B:G.196
,
B:R.354
,
B:R.354
,
B:R.354
,
B:R.354
Salt bridges:
B:R.354
SO4.4:
5 residues within 4Å:
Chain B:
M.22
,
H.23
,
D.24
,
R.312
,
L.316
3
PLIP interactions
:
3 interactions with chain B
Water bridges:
B:R.312
Salt bridges:
B:H.23
,
B:R.312
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.2:
28 residues within 4Å:
Chain A:
V.7
,
G.8
,
V.9
,
G.10
,
Y.11
,
F.12
,
G.13
,
Y.32
,
D.33
,
P.34
,
E.35
,
N.36
,
A.67
,
T.68
,
P.69
,
N.70
,
L.72
,
H.73
,
E.90
,
K.91
,
P.92
,
G.117
,
I.119
,
W.160
,
K.161
,
H.173
,
H.176
,
L.307
19
PLIP interactions
:
19 interactions with chain A
Hydrophobic interactions:
A:F.12
Hydrogen bonds:
A:G.10
,
A:Y.11
,
A:F.12
,
A:G.13
,
A:D.33
,
A:E.35
,
A:N.36
,
A:N.70
,
A:N.70
,
A:H.73
,
A:E.90
,
A:K.91
,
A:W.160
,
A:H.173
Water bridges:
A:D.33
,
A:K.161
Salt bridges:
A:K.161
pi-Stacking:
A:F.12
NAD.5:
28 residues within 4Å:
Chain B:
V.7
,
G.8
,
V.9
,
G.10
,
Y.11
,
F.12
,
G.13
,
Y.32
,
D.33
,
P.34
,
E.35
,
N.36
,
A.67
,
T.68
,
P.69
,
N.70
,
L.72
,
H.73
,
E.90
,
K.91
,
P.92
,
G.117
,
I.119
,
W.160
,
K.161
,
H.173
,
H.176
,
L.307
19
PLIP interactions
:
19 interactions with chain B
Hydrophobic interactions:
B:F.12
Hydrogen bonds:
B:V.9
,
B:G.10
,
B:Y.11
,
B:F.12
,
B:G.13
,
B:N.36
,
B:N.70
,
B:N.70
,
B:E.90
,
B:K.91
,
B:W.160
,
B:H.173
Water bridges:
B:D.33
,
B:E.35
,
B:K.161
Salt bridges:
B:K.161
pi-Stacking:
B:F.12
pi-Cation interactions:
B:K.91
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Horne, C.R. et al., On the structure and function of Escherichia coli YjhC: An oxidoreductase involved in bacterial sialic acid metabolism. Proteins (2020)
Release Date
2019-11-27
Peptides
Uncharacterized oxidoreductase YjhC:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Uncharacterized oxidoreductase YjhC
Toggle Identical (AB)
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme