SMTL ID : 6o26.1

Crystal structure of 3246 Fab in complex with circumsporozoite protein NANA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 12 residues within 4Å: Chain A: F.173, P.174, V.176, S.184, L.185, S.186 Chain B: Q.160, E.161, S.162, S.176, S.177, T.178 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.162, B:S.176, B:S.177, B:T.178, A:F.173, A:S.184, A:S.186

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: D.103, G.104 Chain B: Y.33 Chain C: N.10 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:G.104, C:N.10 Water bridges: C:N.10, C:A.11

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 3 residues within 4Å: Chain B: S.53, S.54, R.55 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.55 Hydrogen bonds: B:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murugan, R. et al., Evolution of protective human antibodies against Plasmodium falciparum circumsporozoite protein repeat motifs. Nat. Med. (2020)

Release Date

2020-03-04

Peptides

3246 Fab heavy chain: A
3246 Fab light chain: B
Circumsporozoite protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

3246 Fab heavy chain

3246 Fab light chain

Circumsporozoite protein