SMTL ID : 6o4w.1

Binary complex of native hAChE with Donepezil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: E.84, M.88, A.437, T.439, L.440, S.441, Y.452, E.455, Y.468 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.84, A:T.439, A:T.439, A:S.441, A:S.441 GOL.2: 3 residues within 4Å: Chain A: L.79, Y.344 Ligands: E20.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.344 Water bridges: A:Y.75, A:T.78, A:L.79, A:S.296 GOL.3: 4 residues within 4Å: Chain A: R.277, T.278, R.279, P.280 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.277 Water bridges: A:G.46, A:R.49 GOL.8: 9 residues within 4Å: Chain B: E.84, M.88, A.437, T.439, L.440, S.441, Y.452, E.455, Y.468 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.441, B:S.441, B:E.455 Water bridges: B:T.439 GOL.9: 3 residues within 4Å: Chain B: L.79, Y.344 Ligands: E20.11 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.75, B:Y.75 GOL.10: 5 residues within 4Å: Chain B: R.49, R.277, T.278, R.279, P.280 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.49, B:R.277 Water bridges: B:G.46, B:G.46, B:E.97, B:E.97, B:A.281

2 x E20: 1-BENZYL-4-[(5,6-DIMETHOXY-1-INDANON-2-YL)METHYL]PIPERIDINE(Non-covalent)

E20.4: 14 residues within 4Å: Chain A: Y.75, W.89, G.124, Y.127, E.205, W.289, S.296, V.297, F.298, Y.340, F.341, Y.344, H.450 Ligands: GOL.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.89, A:Y.340, A:F.341, A:F.341, A:Y.344, A:Y.344, A:Y.344 Hydrogen bonds: A:F.298 pi-Stacking: A:W.89, A:W.289, A:Y.344 E20.11: 15 residues within 4Å: Chain B: Y.75, W.89, G.124, Y.127, E.205, W.289, S.296, V.297, F.298, Y.340, F.341, Y.344, H.450, G.451 Ligands: GOL.9 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.89, B:Y.340, B:F.341, B:F.341, B:Y.344, B:Y.344 Hydrogen bonds: B:F.298 pi-Stacking: B:W.89, B:W.289, B:Y.344

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.5: 5 residues within 4Å: Chain A: K.335, D.336, E.399, W.445, G.447 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.335, A:L.444 Water bridges: A:D.336, A:E.399, A:W.445 NO3.6: 4 residues within 4Å: Chain A: P.39, K.56, Q.69, Y.101 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.56, A:Q.69 Water bridges: A:K.56, A:D.98, A:Y.101 NO3.7: 4 residues within 4Å: Chain A: P.91, N.92, R.93, E.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.91 Water bridges: A:L.95, A:L.95 NO3.12: 4 residues within 4Å: Chain B: D.336, E.399, W.445, G.447 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.399 Water bridges: B:D.336, B:D.336, B:S.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerlits, O. et al., A new crystal form of human acetylcholinesterase for exploratory room-temperature crystallography studies. Chem.Biol.Interact. (2019)

Release Date

2019-06-19

Peptides

Acetylcholinesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Acetylcholinesterase

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