SMTL ID : 6o5g.1

Calmodulin in complex with isomalbrancheamide D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x LMJ: (5aS,12aS,13aS)-9-bromo-8-chloro-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7 ,6-b]carbazol-14-one(Non-covalent)

LMJ.1: 9 residues within 4Å: Chain A: F.96, I.104, L.109, M.113, M.128, A.132, F.145, M.148, M.149 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.96, A:F.145

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.60, D.62, N.64, T.66, E.71 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.60, A:T.66, A:E.71, A:E.71, H2O.1 CA.3: 5 residues within 4Å: Chain A: D.24, D.26, D.28, T.30, E.35 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.24, A:D.28, A:T.30, A:E.35, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.97, D.99, N.101, Y.103, E.108 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:D.99, A:E.108, A:E.108, H2O.3 CA.5: 5 residues within 4Å: Chain A: D.133, D.135, D.137, Q.139, E.144 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.133, A:D.137, A:Q.139, A:E.144, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 3 residues within 4Å: Chain A: T.74, D.84, E.88 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.84, A:D.84, A:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beyett, T.S. et al., Perturbation of the interactions of calmodulin with GRK5 using a natural product chemical probe. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-08-07

Peptides

Calmodulin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calmodulin-1

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