SMTL ID : 6o62.1

Crystal structure of Sec4p, a Rab family GTPase from Candida albicans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: D.22, S.23, G.24, V.25, G.26, K.27, S.28, C.29, N.40, N.127, K.128, D.130, S.157, A.158, K.159 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.24, A:V.25, A:G.26, A:K.27, A:S.28, A:S.28, A:C.29, A:N.40, A:N.40, A:N.127, A:K.128, A:K.128, A:S.157, A:A.158, A:K.159 Water bridges: A:K.27, A:S.28, A:S.28, A:D.69 Salt bridges: A:K.27, A:D.130 pi-Stacking: A:F.39, A:F.39 GDP.2: 15 residues within 4Å: Chain B: D.22, S.23, G.24, V.25, G.26, K.27, S.28, C.29, N.40, N.127, K.128, D.130, S.157, A.158, K.159 23 PLIP interactions: 23 interactions with chain B Hydrogen bonds: B:G.24, B:V.25, B:G.26, B:K.27, B:S.28, B:S.28, B:C.29, B:N.40, B:N.40, B:N.127, B:K.128, B:K.128, B:S.157, B:A.158, B:K.159 Water bridges: B:K.27, B:S.28, B:S.28, B:D.69 Salt bridges: B:K.27, B:D.130 pi-Stacking: B:F.39, B:F.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., To be published. To Be Published

Release Date

2019-04-03

Peptides

Ras-related protein SEC4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ras-related protein SEC4