SMTL ID : 6o6b.1

Rotavirus A-VP3 (RVA-VP3)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.1: 5 residues within 4Å: Chain A: H.574, R.577, H.612, Y.648, H.650 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.650, A:H.650 Salt bridges: A:H.574, A:R.577 5GP.2: 5 residues within 4Å: Chain B: H.574, R.577, H.612, Y.648, H.650 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.650, B:H.650 Salt bridges: B:H.574, B:R.577 5GP.3: 5 residues within 4Å: Chain C: H.574, R.577, H.612, Y.648, H.650 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.650, C:H.650 Salt bridges: C:H.574, C:R.577 5GP.4: 5 residues within 4Å: Chain D: H.574, R.577, H.612, Y.648, H.650 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:H.650, D:H.650 Salt bridges: D:H.574, D:R.577

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, D. et al., A sub-atomic resolution cryo-EM of full-length Rotavirus A-VP3 (RVA-VP3). To Be Published

Release Date

2020-03-11

Peptides

Protein VP3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein VP3

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