SMTL ID : 6o6l.1

The Structure of EgtB(Cabther) in complex with Hercynine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x AVJ: N,N,N-trimethyl-histidine(Non-covalent)

AVJ.1: 10 residues within 4Å: Chain A: Y.100, H.160, Q.163, H.164, L.167, Y.392, N.421, F.422, F.423 Ligands: FE.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.163 Water bridges: A:S.99, A:R.110 pi-Cation interactions: A:F.422 AVJ.3: 10 residues within 4Å: Chain B: Y.100, H.160, Q.163, H.164, L.167, Y.392, N.421, F.422, F.423 Ligands: FE.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Q.163 Water bridges: B:Y.100, B:R.110, B:R.110, B:R.110 pi-Cation interactions: B:F.422 AVJ.5: 10 residues within 4Å: Chain C: Y.100, H.160, Q.163, H.164, L.167, Y.392, N.421, F.422, F.423 Ligands: FE.6 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Q.163 Water bridges: C:Y.100, C:R.110, C:R.110, C:Y.392 pi-Cation interactions: C:F.422 AVJ.7: 10 residues within 4Å: Chain D: Y.100, H.160, Q.163, H.164, L.167, Y.392, N.421, F.422, F.423 Ligands: FE.8 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Q.163 Hydrogen bonds: D:Y.100 Water bridges: D:S.99 pi-Cation interactions: D:F.422

4 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: H.69, H.160, H.164 Ligands: AVJ.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.69, A:H.160, A:H.164, H2O.4, H2O.6 FE.4: 4 residues within 4Å: Chain B: H.69, H.160, H.164 Ligands: AVJ.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.69, B:H.160, B:H.164, H2O.7, H2O.12 FE.6: 4 residues within 4Å: Chain C: H.69, H.160, H.164 Ligands: AVJ.5 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.69, C:H.160, C:H.164, H2O.15 FE.8: 4 residues within 4Å: Chain D: H.69, H.160, H.164 Ligands: AVJ.7 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.69, D:H.160, D:H.164, H2O.21, H2O.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naowarojna, N. et al., Crystal Structure of the Ergothioneine Sulfoxide Synthase fromCandidatus Chloracidobacterium thermophilumand Structure-Guided Engineering To Modulate Its Substrate Selectivity. Acs Catalysis (2019)

Release Date

2019-07-31

Peptides

EgtB (Cabther): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

EgtB (Cabther)

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