SMTL ID : 6o7f.2 (1 other biounit)

Mycobacterium tuberculosis L-alanine dehydrogenase x-ray structure in complex with N6-isobutyl adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x NKV: N-(2-methylpropanoyl)adenosine(Non-covalent)

NKV.1: 13 residues within 4Å: Chain A: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.249 Hydrogen bonds: A:I.199, A:K.203, A:K.203, A:S.220, A:L.240 Water bridges: A:T.178, A:A.179 NKV.2: 13 residues within 4Å: Chain B: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.249 Hydrogen bonds: B:I.199, B:K.203, B:K.203, B:S.220, B:L.240 Water bridges: B:T.178, B:A.179 NKV.3: 13 residues within 4Å: Chain C: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.249 Hydrogen bonds: C:I.199, C:K.203, C:K.203, C:S.220, C:L.240 Water bridges: C:T.178, C:A.179 NKV.4: 13 residues within 4Å: Chain D: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:L.249 Hydrogen bonds: D:I.199, D:K.203, D:K.203, D:S.220, D:L.240 Water bridges: D:T.178, D:A.179 NKV.5: 13 residues within 4Å: Chain E: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:L.249 Hydrogen bonds: E:I.199, E:K.203, E:K.203, E:S.220, E:L.240 Water bridges: E:T.178, E:A.179 NKV.6: 13 residues within 4Å: Chain F: I.174, G.175, G.177, L.197, D.198, I.199, K.203, S.220, A.222, A.238, V.239, L.240, L.249 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:L.249 Hydrogen bonds: F:I.199, F:K.203, F:K.203, F:S.220, F:L.240 Water bridges: F:T.178, F:A.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.-B. et al., Mycobacterium tuberculosis L-alanine dehydrogenase x-ray structure in complex with N6-isobutyl adenosine. To Be Published

Release Date

2020-09-09

Peptides

Alanine dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Alanine dehydrogenase

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