SMTL ID : 6o9n.1 (1 other biounit)

Structural insights on a new fungal aryl-alcohol oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: V.278, F.279, L.289, E.291, L.300, F.301, N.302 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.278

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: F.371, E.376, N.380, T.382, F.383 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 39 residues within 4Å: Chain A: V.41, G.42, G.43, G.44, T.45, S.46, I.66, E.67, Y.68, W.95, L.113, G.115, Q.116, V.117, G.119, G.120, S.121, S.122, V.124, N.125, G.126, M.127, F.128, H.272, Q.273, V.274, S.312, A.313, G.314, H.317, V.321, M.578, H.579, D.611, M.612, H.622, L.623, S.624, A.627 35 PLIP interactions: 35 interactions with chain A Hydrophobic interactions: A:L.113, A:L.113, A:M.578 Hydrogen bonds: A:G.43, A:T.45, A:T.45, A:S.46, A:Y.68, A:G.115, A:V.117, A:G.119, A:G.120, A:S.121, A:S.122, A:N.125, A:N.125, A:G.126, A:F.128, A:F.128, A:V.274, A:V.274, A:R.324, A:H.579, A:M.612, A:H.622, A:L.623, A:S.624 Water bridges: A:G.44, A:G.47, A:S.121, A:S.121, A:D.130, A:Q.273 pi-Stacking: A:H.579 pi-Cation interactions: A:H.579

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.4: 2 residues within 4Å: Chain A: A.106, N.107 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: N.504, S.506, D.507, A.510 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.504, A:D.507, A:D.507

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: R.33, R.263, A.264, Y.266, D.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.267 Salt bridges: A:R.33

1 x CA: CALCIUM ION(Non-covalent)

CA.7: 5 residues within 4Å: Chain A: T.77, F.78, D.79, Y.400, L.402 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.77, A:F.78, A:D.79, A:Y.400, A:L.402, H2O.2

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.8: 9 residues within 4Å: Chain A: M.219, G.220, I.221, N.222, E.233, H.415, E.469, F.534 Ligands: EDO.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.221 Hydrogen bonds: A:M.219, A:G.220, A:E.469 Water bridges: A:N.222, A:N.222

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 3 residues within 4Å: Chain A: P.223, V.224 Ligands: B3P.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kadowaki, M.A.S. et al., Enzymatic versatility and thermostability of a new aryl-alcohol oxidase from Thermothelomyces thermophilus M77. Biochim Biophys Acta Gen Subj (2020)

Release Date

2020-03-18

Peptides

Aryl-alcohol oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aryl-alcohol oxidase

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