SMTL ID : 6obd.2 (1 other biounit)

Crystal structure of anti-GLD52 Fab complex with human GLD52 peptide mimetic

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: N.141, N.142, S.178 Chain B: H.165 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.165, B:H.165 ZN.2: 1 residues within 4Å: Chain B: E.1 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.1

1 x OPE: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER(Covalent)

OPE.3: 4 residues within 4Å: Chain A: N.33, K.35 Chain C: P.9, S.10 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.33, C:S.10 Water bridges: A:Y.37, A:Y.37 Salt bridges: A:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, H. et al., Engineering an anti-CD52 antibody for enhanced deamidation stability. Mabs (2019)

Release Date

2019-07-03

Peptides

anti-GLD52 Fab light chain: A
anti-GLD52 Fab heavy chain: B
GLD52 peptide mimetic: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
F

anti-GLD52 Fab light chain

anti-GLD52 Fab heavy chain

GLD52 peptide mimetic

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