SMTL ID : 6obg.1 (1 other biounit)

Ricin A chain bound to VHH antibody V8E6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: H.61 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.61 ZN.2: 1 residues within 4Å: Chain A: H.90 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.90, H2O.1, H2O.3, H2O.5, H2O.6 ZN.3: 1 residues within 4Å: Chain A: E.63 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.63, A:E.63, H2O.6 ZN.4: 1 residues within 4Å: Chain A: H.36 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.36, H2O.2 ZN.7: 2 residues within 4Å: Chain B: H.100, E.104 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.100, B:E.104, H2O.6, H2O.7

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: Q.1, Y.2, H.102, L.103, F.104 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: H.61, E.141 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol. (2020)

Release Date

2020-04-01

Peptides

Ricin A chain: A
VHH antibody V8E6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ricin A chain

VHH antibody V8E6

Related Entries With Identical Sequence