SMTL ID : 6obh.1

Structure of HIV-1 CA 1/2-hexamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

hetero-2-2-2-mer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: E.213 Chain F: M.69, E.72 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:E.213, F:E.72 NA.2: 1 residues within 4Å: Chain B: E.176 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.176 NA.3: 3 residues within 4Å: Chain B: M.69, E.72 Chain C: E.213 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.213 NA.4: 1 residues within 4Å: Chain D: E.176 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.176 NA.5: 5 residues within 4Å: Chain D: M.69, E.72 Chain E: T.211, L.212, E.213 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:L.212, E:E.213, D:E.72 NA.6: 1 residues within 4Å: Chain F: E.176 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Summers, B.J. et al., Modular HIV-1 Capsid Assemblies Reveal Diverse Host-Capsid Recognition Mechanisms. Cell Host Microbe (2019)

Release Date

2019-08-28

Peptides

CA: AD
CA: BE
CA: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

CA

CA

CA