SMTL ID : 6oc1.1

Crystal structure of human DHODH with TAK-632

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ORO: OROTIC ACID(Non-covalent)

ORO.1: 13 residues within 4Å: Chain A: K.73, N.118, R.119, Y.120, G.121, F.122, N.185, S.188, P.189, N.190, N.257, T.258 Ligands: FMN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.122 Hydrogen bonds: A:N.118, A:N.118, A:N.118, A:Y.120, A:G.121, A:F.122, A:N.185, A:N.190, A:N.257, A:N.257 Salt bridges: A:K.73

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 25 residues within 4Å: Chain A: A.68, A.69, G.70, K.73, G.92, S.93, N.118, Y.120, N.154, N.185, K.228, T.256, N.257, T.258, S.278, G.279, L.282, V.306, G.307, G.308, L.328, Y.329, T.330 Ligands: ORO.1, 1SU.4 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:N.118, A:Y.120, A:Y.120, A:Y.329, A:Y.329 Hydrogen bonds: A:A.69, A:K.73, A:S.93, A:S.93, A:N.154, A:K.228, A:K.228, A:G.279, A:G.307, A:G.308, A:Y.329, A:T.330, A:T.330

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: R.30, H.74, H.125 4 PLIP interactions: 4 interactions with chain A Water bridges: A:N.123 Salt bridges: A:R.30, A:H.74, A:H.125

1 x 1SU: N-{7-cyano-6-[4-fluoro-3-({[3-(trifluoromethyl)phenyl]acetyl}amino)phenoxy]-1,3-benzothiazol-2-yl}cyclopropanecarboxamide(Non-covalent)

1SU.4: 19 residues within 4Å: Chain A: Y.11, L.15, M.16, Q.20, P.25, A.28, H.29, A.32, F.35, T.36, L.40, L.41, P.42, F.71, Y.329, L.332, T.333, P.337 Ligands: FMN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.29, A:A.32, A:F.35, A:F.35, A:Y.329 Hydrogen bonds: A:Q.20, A:L.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abt, E.R. et al., Metabolic Modifier Screen Reveals Secondary Targets of Protein Kinase Inhibitors within Nucleotide Metabolism. Cell Chem Biol (2020)

Release Date

2019-11-13

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

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