SMTL ID : 6oc6.1 (1 other biounit)

Lanthanide-dependent methanol dehydrogenase XoxF from Methylobacterium extorquens, in complex with Lanthanum and Pyrroloquinoline quinone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

monomer

Ligands

1 x LA: LANTHANUM (III) ION(Non-covalent)

LA.1: 5 residues within 4Å: Chain A: E.192, N.276, D.318, D.320 Ligands: PQQ.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.192, A:E.192, A:D.318, A:D.320, A:D.320

1 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 22 residues within 4Å: Chain A: E.76, C.124, C.125, V.128, R.130, T.174, S.189, G.190, G.191, E.192, C.256, W.258, N.276, D.318, D.320, R.345, D.416, Q.417, W.494, G.557, W.558 Ligands: LA.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.558 Hydrogen bonds: A:R.130, A:T.174, A:S.189, A:S.189, A:G.190, A:G.191, A:E.192, A:R.345, A:R.345, A:W.558 Salt bridges: A:R.130, A:R.130 pi-Stacking: A:W.258, A:W.258, A:W.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Good, N.M. et al., Lanthanide-dependent alcohol dehydrogenases require an essential aspartate residue for metal coordination and enzymatic function. J.Biol.Chem. (2020)

Release Date

2020-05-13

Peptides

Lanthanide-dependent methanol dehydrogenase XoxF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lanthanide-dependent methanol dehydrogenase XoxF

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