SMTL ID : 6ocg.1

Crystal structure of VASH1-SVBP complex bound with EpoY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.145, K.198, K.200 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.36, I.37, L.43 Chain B: V.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.36 Water bridges: A:R.36

1 x BJL: N-[(3R)-4-ethoxy-3-hydroxy-4-oxobutanoyl]-L-tyrosine(Covalent)

BJL.3: 8 residues within 4Å: Chain A: Y.76, K.110, C.111, L.112, R.145, H.146, S.163, R.164 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.145 Hydrogen bonds: A:C.111, A:L.112, A:R.145, A:R.164 Salt bridges: A:H.146, A:R.164 pi-Stacking: A:F.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, F. et al., Structural basis of tubulin detyrosination by vasohibins. Nat.Struct.Mol.Biol. (2019)

Release Date

2019-06-26

Peptides

Tubulinyl-Tyr carboxypeptidase 1: A
Small vasohibin-binding protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tubulinyl-Tyr carboxypeptidase 1

Small vasohibin-binding protein