SMTL ID : 6odd.1 (1 other biounit)

Crystal structure of the human complex ACP-ISD11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 8Q1: S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate(Covalent)

8Q1.1: 25 residues within 4Å: Chain A: D.40, S.41, L.42 Chain B: R.2, V.5, L.6, M.12, Y.24, Y.27, A.28, R.31, I.32, A.35, F.36, N.39, K.40, V.42, I.48, L.51, V.52, K.54, A.55, D.58, I.62, Q.65 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.5, B:F.36, B:I.48 Hydrogen bonds: B:N.39, B:N.39, B:K.40, A:S.41 Salt bridges: B:R.2 8Q1.3: 25 residues within 4Å: Chain C: D.40, S.41, L.42 Chain D: R.2, V.5, L.6, M.12, Y.24, Y.27, A.28, R.31, I.32, A.35, F.36, N.39, K.40, V.42, I.48, L.51, V.52, K.54, A.55, D.58, I.62, Q.65 8 PLIP interactions: 7 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:V.5, D:F.36, D:I.48 Hydrogen bonds: D:N.39, D:N.39, D:K.40, C:S.41 Salt bridges: D:R.2

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.79, D.82 Chain C: D.79, K.80 Ligands: CA.4 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:D.79, A:D.82, C:D.79, H2O.1, H2O.2 CA.4: 5 residues within 4Å: Chain A: D.79, K.80 Chain C: D.79, D.82 Ligands: CA.2 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: C:D.79, C:D.82, A:D.79, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herrera, M.G. et al., Structure of the Human ACP-ISD11 Heterodimer. Biochemistry (2019)

Release Date

2019-11-27

Peptides

Acyl carrier protein, mitochondrial: AC
LYR motif-containing protein 4: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Acyl carrier protein, mitochondrial

LYR motif-containing protein 4

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