SMTL ID : 6odl.1

Crystal structure of GluN2A agonist binding domain with 4-butyl-(S)-CCG-IV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x M7V: (1S,2R)-2-[(S)-amino(carboxy)methyl]-1-butylcyclopropane-1-carboxylic acid(Non-covalent)

M7V.1: 14 residues within 4Å: Chain A: H.82, S.108, L.109, T.110, R.115, V.163, P.164, N.165, G.166, S.167, T.168, Y.208, D.209, Y.239 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.163, A:Y.208 Hydrogen bonds: A:H.82, A:S.108, A:T.110, A:S.167, A:T.168, A:D.209 Water bridges: A:G.129, A:G.166, A:S.167 Salt bridges: A:H.82, A:R.115 M7V.2: 14 residues within 4Å: Chain B: K.81, H.82, S.108, L.109, T.110, R.115, V.163, P.164, N.165, G.166, S.167, T.168, Y.208, D.209 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.81, B:V.163 Hydrogen bonds: B:H.82, B:T.110, B:T.110, B:G.166, B:S.167, B:T.168, B:T.168, B:D.209 Water bridges: B:G.166 Salt bridges: B:H.82, B:R.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maolanon, A. et al., Stereoselective synthesis of novel 2'-(S)-CCG-IV analogues as potent NMDA receptor agonists. Eur.J.Med.Chem. (2021)

Release Date

2020-04-01

Peptides

Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 2A,Glutamate receptor ionotropic, NMDA 2A