SMTL ID : 6oel.1

Engineered Fab bound to IL-4 receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 3 residues within 4Å: Chain B: N.31, T.34, N.56 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.34, B:N.56 Hydrogen bonds: B:T.34, B:T.34

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: N.106, T.120 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain B: V.43, N.76, S.92, K.94 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.94 Hydrogen bonds: B:S.92, B:S.92 NAG.4: 4 residues within 4Å: Chain B: I.152, N.154 Chain C: S.106, Q.109 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.154, C:Q.109 NAG.5: 1 residues within 4Å: Chain B: N.187 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain C: F.5, Y.9, N.11, L.46 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.5 Hydrogen bonds: C:Y.9, C:N.11

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.7: 5 residues within 4Å: Chain D: R.40, R.45, S.66, R.70, D.93 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.40, D:R.40, D:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spangler, J.B. et al., A strategy for the selection of monovalent antibodies that span protein dimer interfaces. J.Biol.Chem. (2019)

Release Date

2019-08-07

Peptides

engineered Interleukin-4, RGA variant: A
Interleukin-4 receptor subunit alpha: B
Cytokine receptor common subunit gamma: C
engineered Fab heavy chain: D
engineered Fab light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

E
L

engineered Interleukin-4, RGA variant

Interleukin-4 receptor subunit alpha

Cytokine receptor common subunit gamma

engineered Fab heavy chain

engineered Fab light chain