SMTL ID : 6of8.1

Structure of Thr354Asn, Glu355Gln, Thr412Asn, Ile414Met, Ile464His, and Phe467Met mutant human CamKII-alpha hub domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-14-mer

Ligands

10 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: T.30, K.31, C.33, Q.123 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.30, A:C.33 K.2: 6 residues within 4Å: Chain A: M.37, T.38, A.39, V.49, E.50, G.51 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.49, A:G.51 K.5: 4 residues within 4Å: Chain E: T.30, K.31, C.33, Q.123 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:T.30, E:C.33 K.7: 5 residues within 4Å: Chain F: T.30, K.31, C.33, K.121, Q.123 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.30, F:C.33 K.8: 4 residues within 4Å: Chain G: T.30, K.31, C.33, Q.123 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:T.30, G:K.31, G:C.33 K.9: 4 residues within 4Å: Chain H: T.30, K.31, C.33, Q.123 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:T.30, H:C.33 K.10: 6 residues within 4Å: Chain H: M.37, T.38, A.39, V.49, E.50, G.51 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:V.49, H:G.51 K.13: 4 residues within 4Å: Chain L: T.30, K.31, C.33, Q.123 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:T.30, L:C.33 K.15: 5 residues within 4Å: Chain M: T.30, K.31, C.33, K.121, Q.123 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:T.30, M:C.33 K.16: 4 residues within 4Å: Chain N: T.30, K.31, C.33, Q.123 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:T.30, N:K.31, N:C.33

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: Q.108 Chain C: Q.108 Chain E: L.45, G.46, N.47 Chain G: L.45, G.46, N.47 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain G, 1 interactions with chain E Hydrogen bonds: C:Q.108, C:Q.108, G:N.47, E:N.47 GOL.4: 6 residues within 4Å: Chain A: L.45, N.47 Chain D: Q.108 Chain E: Q.108 Chain K: L.45, N.47 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain D, 1 interactions with chain A, 1 interactions with chain E Hydrogen bonds: K:N.47, D:Q.108, A:N.47, E:Q.108 GOL.6: 10 residues within 4Å: Chain B: I.92, Q.108 Chain F: L.45, G.46, N.47 Chain I: Q.108 Chain M: L.45, G.46, N.47 Ligands: GOL.14 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain B, 1 interactions with chain F Hydrogen bonds: M:N.47, B:Q.108, F:N.47 GOL.11: 8 residues within 4Å: Chain H: Q.108 Chain J: Q.108 Chain L: L.45, G.46, N.47 Chain N: L.45, G.46, N.47 4 PLIP interactions: 2 interactions with chain J, 1 interactions with chain L, 1 interactions with chain N Hydrogen bonds: J:Q.108, J:Q.108, L:N.47, N:N.47 GOL.12: 6 residues within 4Å: Chain D: L.45, N.47 Chain H: L.45, N.47 Chain K: Q.108 Chain L: Q.108 4 PLIP interactions: 1 interactions with chain H, 1 interactions with chain D, 1 interactions with chain K, 1 interactions with chain L Hydrogen bonds: H:N.47, D:N.47, K:Q.108, L:Q.108 GOL.14: 10 residues within 4Å: Chain B: Q.108 Chain F: L.45, G.46, N.47 Chain I: I.92, Q.108 Chain M: L.45, G.46, N.47 Ligands: GOL.6 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain F, 1 interactions with chain I Hydrogen bonds: M:N.47, F:N.47, I:Q.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McSpadden, E.D. et al., Variation in assembly stoichiometry in non-metazoan homologs of the hub domain of Ca2+/calmodulin-dependent protein kinase II. Protein Sci. (2019)

Release Date

2019-04-17

Peptides

Calcium/calmodulin-dependent protein kinase type II subunit alpha: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
B

C
C

D
G

E
E

F
A

G
D

H
F

I
B

J
C

K
G

L
E

M
A

N
D

Calcium/calmodulin-dependent protein kinase type II subunit alpha

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