SMTL ID : 6og1.1

Focus classification structure of the hyperactive ClpB mutant K476C, bound to casein, pre-state

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 9 residues within 4Å: Chain A: D.178, P.179, V.180, I.181, P.208, G.209, I.349, P.387, I.391 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.178, A:I.181, A:I.181, A:G.209 ADP.2: 12 residues within 4Å: Chain A: Q.573, G.608, V.609, T.612, E.613, R.631, H.764, I.774, Q.778, Y.812, A.814, R.815 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.573, A:T.612, A:T.612, A:E.613, A:Q.778 Salt bridges: A:R.815, A:R.815 ADP.4: 14 residues within 4Å: Chain B: R.569, V.570, I.571, T.607, G.608, V.609, G.610, T.612, E.613, L.766, I.774, A.814, R.815, K.818 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:I.571, B:G.608, B:V.609, B:T.612, B:T.612, B:K.818, B:K.818 Salt bridges: B:R.815, B:R.815, B:K.818

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.3: 18 residues within 4Å: Chain A: R.331 Chain B: D.178, P.179, V.180, I.181, R.183, E.207, P.208, G.209, V.210, G.211, K.212, T.213, A.214, I.349, L.353, P.387, I.391 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.178, B:I.181, B:I.181, B:G.209, B:V.210, B:G.211, B:K.212, B:T.213, B:T.213, B:A.214, A:R.331 Salt bridges: B:K.212, A:R.331, A:R.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rizo, A.N. et al., Structural basis for substrate gripping and translocation by the ClpB AAA+ disaggregase. Nat Commun (2019)

Release Date

2019-06-12

Peptides

Hyperactive disaggregase ClpB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
A

Hyperactive disaggregase ClpB

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