SMTL ID : 6oge.1

Cryo-EM structure of Her2 extracellular domain-Trastuzumab Fab-Pertuzumab Fab complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: Q.2, C.230, L.231, A.232, N.237, S.239, G.240 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain A: N.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 NAG.3: 2 residues within 4Å: Chain A: D.163, N.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.165 NAG.4: 3 residues within 4Å: Chain A: Q.546, P.547, N.549 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.546 NAG.5: 1 residues within 4Å: Chain A: N.508 No protein-ligand interaction detected (PLIP) NAG.6: 5 residues within 4Å: Chain A: S.587, Y.588, M.589, I.591, N.607 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.607

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, Y. et al., Cryo-EM Structure of HER2-trastuzumab-pertuzumab complex. Plos One (2019)

Release Date

2019-05-15

Peptides

Receptor tyrosine-protein kinase erbB-2: A
Pertuzumab FAB LIGHT CHAIN: B
Pertuzumab FAB HEAVY CHAIN: C
Trastuzumab FAB LIGHT CHAIN: D
Trastuzumab FAB HEAVY CHAIN: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Receptor tyrosine-protein kinase erbB-2

Pertuzumab FAB LIGHT CHAIN

Pertuzumab FAB HEAVY CHAIN

Trastuzumab FAB LIGHT CHAIN

Trastuzumab FAB HEAVY CHAIN

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