SMTL ID : 6ogk.1

MeCP2 MBD in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

17 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 5 residues within 4Å: Chain A: T.82, V.83 Chain B: T.4 Ligands: UNX.7, UNX.13 Ligand excluded by PLIP UNX.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.3: 5 residues within 4Å: Chain A: N.77, D.78, F.79, D.80, R.86 Ligand excluded by PLIP UNX.4: 2 residues within 4Å: Chain A: I.63, E.67 Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: T.84, G.85 Ligand excluded by PLIP UNX.6: 1 residues within 4Å: Chain A: Y.44 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: V.83, T.84 Chain B: T.4 Ligands: UNX.1 Ligand excluded by PLIP UNX.8: 5 residues within 4Å: Chain A: S.58, E.61 Chain B: C.6 Ligands: UNX.9, UNX.15 Ligand excluded by PLIP UNX.9: 5 residues within 4Å: Chain A: S.58, E.61 Chain B: C.6 Ligands: UNX.8, UNX.15 Ligand excluded by PLIP UNX.10: 6 residues within 4Å: Chain A: F.79, D.80, F.81, T.82, R.86 Chain B: A.5 Ligand excluded by PLIP UNX.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain B: A.5 Ligands: UNX.1 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain B: T.9 Chain C: G.7 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain B: C.6, A.7 Ligands: UNX.8, UNX.9 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain A: R.86 Chain B: A.5 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain C: C.1, G.2 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain C: G.2, G.3 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.11: 1 residues within 4Å: Chain A: D.78 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.78, A:D.78, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lei, M. et al., Plasticity at the DNA recognition site of the MeCP2 mCG-binding domain. Biochim Biophys Acta Gene Regul Mech (2019)

Release Date

2019-05-01

Peptides

Methyl-CpG-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyl-CpG-binding protein 2