- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XAN: XANTHINE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 6 residues within 4Å:- Chain A: H.100, H.102, H.258, H.297, D.348
- Ligands: XAN.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.100, A:H.102, A:H.258, A:D.348
ZN.10: 6 residues within 4Å:- Chain B: H.100, H.102, H.258, H.297, D.348
- Ligands: XAN.9
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.100, B:H.102, B:H.258, B:D.348
- 6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.3: 7 residues within 4Å:- Chain A: I.48, R.50, E.402, T.403, V.409, G.410, K.411
No protein-ligand interaction detected (PLIP)1PE.4: 6 residues within 4Å:- Chain A: S.151, Q.485, V.486, Y.487, Q.488, I.489
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Y.487
1PE.5: 3 residues within 4Å:- Chain A: R.374, E.375, T.376
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.375
1PE.11: 7 residues within 4Å:- Chain B: I.48, R.50, E.402, T.403, V.409, G.410, K.411
No protein-ligand interaction detected (PLIP)1PE.12: 6 residues within 4Å:- Chain B: S.151, Q.485, V.486, Y.487, Q.488, I.489
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Y.487
1PE.13: 3 residues within 4Å:- Chain B: R.374, E.375, T.376
No protein-ligand interaction detected (PLIP)- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 4 residues within 4Å:- Chain A: G.113, N.114, K.123, Y.124
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.114
- Water bridges: A:K.123, A:K.123
- Salt bridges: A:K.123
SO4.7: 3 residues within 4Å:- Chain A: P.423, G.424, S.425
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.424
SO4.8: 7 residues within 4Å:- Chain A: T.359, R.362, Q.363
- Chain B: T.359, R.362, Q.363
- Ligands: SO4.16
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Salt bridges: A:R.362, B:R.362
- Hydrogen bonds: B:T.359
SO4.14: 4 residues within 4Å:- Chain B: G.113, N.114, K.123, Y.124
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.114
- Water bridges: B:K.123, B:K.123
- Salt bridges: B:K.123
SO4.15: 3 residues within 4Å:- Chain B: P.423, G.424, S.425
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.424
SO4.16: 7 residues within 4Å:- Chain A: T.359, R.362, Q.363
- Chain B: T.359, R.362, Q.363
- Ligands: SO4.8
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.359
- Salt bridges: A:R.362, B:R.362
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shek, R. et al., Structural Determinants for Substrate Selectivity in Guanine Deaminase Enzymes of the Amidohydrolase Superfamily. Biochemistry (2019)
- Release Date
- 2019-07-24
- Peptides
- Probable guanine deaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x XAN: XANTHINE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shek, R. et al., Structural Determinants for Substrate Selectivity in Guanine Deaminase Enzymes of the Amidohydrolase Superfamily. Biochemistry (2019)
- Release Date
- 2019-07-24
- Peptides
- Probable guanine deaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A