SMTL ID : 6ohr.3 (5 other biounits)

Structure of compound 5 bound human Phospholipase D1 catalytic domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x MKG: 4-fluoro-N-{(2S)-1-[(5R)-5-(3-fluorophenyl)-2-oxo-1-oxa-3,9-diazaspiro[5.5]undecan-9-yl]propan-2-yl}benzamide(Non-covalent)

MKG.1: 16 residues within 4Å: Chain A: W.72, W.73, G.119, H.155, R.177, F.225, W.251, Q.355, F.356, G.399, F.400, I.415, Y.467, N.486, N.488, R.490 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.72, A:W.72, A:W.73, A:F.225, A:F.225, A:F.225, A:W.251, A:F.356, A:F.400, A:I.415, A:Y.467 Hydrogen bonds: A:H.155, A:R.177, A:R.177, A:Q.355, A:N.486 pi-Cation interactions: A:R.490 Halogen bonds: A:N.488

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metrick, C.M. et al., Human PLD structures enable drug design and characterization of isoenzyme selectivity. Nat.Chem.Biol. (2020)

Release Date

2020-02-19

Peptides

Phospholipase D1, chimeric constuct: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Phospholipase D1, chimeric constuct

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