SMTL ID : 6ojk.1

Structure of YePL2A K291W in Complex with Tetragalacturonic Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ADA- ADA- ADA- ADA: alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid

ADA-ADA-ADA-ADA.1: 16 residues within 4Å: Chain A: E.149, E.153, K.155, R.194, L.222, F.224, N.226, Y.271, T.288, H.289, S.290, W.291, R.295, R.318, Y.387, R.553 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.226, A:R.318, A:R.553 Water bridges: A:Y.271, A:Y.271, A:R.318 Salt bridges: A:R.318

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.425, N.429, D.435 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.362, A:D.362 EDO.3: 6 residues within 4Å: Chain A: S.94, Q.106, Y.160, D.162, L.163, S.166 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.94, A:Q.106, A:Y.160, A:Y.160, A:S.166, A:S.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, D.R. et al., A surrogate structural platform informed by ancestral reconstruction and resurrection of a putative carbohydrate binding module hybrid illuminates the neofunctionalization of a pectate lyase. J.Struct.Biol. (2019)

Release Date

2019-11-20

Peptides

Periplasmic pectate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Periplasmic pectate lyase