SMTL ID : 6ojo.1

Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with pterine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-octamer

Ligands

8 x PE0: PTERINE(Non-covalent)

PE0.1: 10 residues within 4Å: Chain A: V.28, C.74, L.75, S.76, Y.77, A.78 Chain C: V.41, L.95, V.96, E.97 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:L.75, A:Y.77, A:A.78, C:V.96 Water bridges: A:Y.77, C:V.41 pi-Stacking: A:Y.77, A:Y.77 Salt bridges: C:E.97 PE0.2: 10 residues within 4Å: Chain B: V.28, C.74, L.75, S.76, Y.77, A.78 Chain D: V.41, L.95, V.96, E.97 10 PLIP interactions: 4 interactions with chain D, 6 interactions with chain B Hydrogen bonds: D:V.96, B:L.75, B:Y.77, B:Y.77, B:A.78 Water bridges: D:V.41, D:K.122 Salt bridges: D:E.97 pi-Stacking: B:Y.77, B:Y.77 PE0.3: 9 residues within 4Å: Chain B: V.41, L.95, V.96, E.97 Chain C: C.74, L.75, S.76, Y.77, A.78 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:L.75, C:Y.77, C:Y.77, C:A.78, B:V.96 pi-Stacking: C:Y.77, C:Y.77 Water bridges: B:V.41, B:K.122 Salt bridges: B:E.97 PE0.4: 9 residues within 4Å: Chain A: V.41, L.95, V.96, E.97 Chain D: C.74, L.75, S.76, Y.77, A.78 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain D Hydrogen bonds: A:V.96, D:L.75, D:Y.77, D:A.78 Water bridges: A:V.41, A:E.97, A:K.122 Salt bridges: A:E.97 pi-Stacking: D:Y.77, D:Y.77 PE0.5: 10 residues within 4Å: Chain E: V.28, C.74, L.75, S.76, Y.77, A.78 Chain G: V.41, L.95, V.96, E.97 9 PLIP interactions: 6 interactions with chain E, 3 interactions with chain G Hydrogen bonds: E:L.75, E:Y.77, E:Y.77, E:A.78, G:V.96 pi-Stacking: E:Y.77, E:Y.77 Water bridges: G:V.41 Salt bridges: G:E.97 PE0.6: 10 residues within 4Å: Chain F: V.28, C.74, L.75, S.76, Y.77, A.78 Chain H: V.41, L.95, V.96, E.97 9 PLIP interactions: 4 interactions with chain H, 5 interactions with chain F Hydrogen bonds: H:V.96, F:L.75, F:Y.77, F:A.78 Water bridges: H:V.41, H:K.122 Salt bridges: H:E.97 pi-Stacking: F:Y.77, F:Y.77 PE0.7: 9 residues within 4Å: Chain F: V.41, L.95, V.96, E.97 Chain G: C.74, L.75, S.76, Y.77, A.78 9 PLIP interactions: 4 interactions with chain F, 5 interactions with chain G Hydrogen bonds: F:V.96, G:L.75, G:Y.77, G:A.78 Water bridges: F:V.41, F:K.122 Salt bridges: F:E.97 pi-Stacking: G:Y.77, G:Y.77 PE0.8: 9 residues within 4Å: Chain E: V.41, L.95, V.96, E.97 Chain H: C.74, L.75, S.76, Y.77, A.78 11 PLIP interactions: 4 interactions with chain E, 7 interactions with chain H Hydrogen bonds: E:V.96, H:L.75, H:Y.77, H:Y.77, H:A.78 Water bridges: E:V.41, E:K.122, H:L.75 Salt bridges: E:E.97 pi-Stacking: H:Y.77, H:Y.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bourne, C.R., Dihydroneopterin aldolase (DHNA) from Yersinia pestis co-crystallized with pterine. To Be Published

Release Date

2020-04-15

Peptides

7,8-dihydroneopterin aldolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

7,8-dihydroneopterin aldolase

Related Entries With Identical Sequence