SMTL ID : 6oju.5 (5 other biounits)

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-D-glutamic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

monomer

Ligands

1 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 12 residues within 4Å: Chain A: R.27, C.172, H.173, Q.191, R.192, S.193, G.194, D.195, N.203, H.233, Y.235 Ligands: D96.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.195 Hydrogen bonds: A:H.173, A:Q.191, A:S.193, A:D.195, A:N.203, A:N.203, A:H.233 Salt bridges: A:R.27, A:R.192

1 x D96: N-{4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}-D-glutamic acid(Non-covalent)

D96.2: 16 residues within 4Å: Chain A: K.54, R.55, V.56, F.57, I.85, W.86, N.89, L.169, D.195, L.198, G.199, F.202, Y.235, M.288, A.289 Ligands: UMP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.57, A:I.85, A:I.85, A:F.202, A:F.202 Hydrogen bonds: A:F.57, A:N.89, A:L.198, A:A.289, A:A.289 Salt bridges: A:K.54, A:D.195 pi-Stacking: A:F.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Czyzyk, D.J. et al., Understanding the structural basis of species selective, stereospecific inhibition for Cryptosporidium and human thymidylate synthase. Febs Lett. (2019)

Release Date

2019-06-19

Peptides

Thymidylate synthase,Thymidylate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Thymidylate synthase,Thymidylate synthase

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