SMTL ID : 6ojz.1

PilT4 from Geobacter metallireducens bound to ADP with partial occupancy: C3ocococ conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 11 residues within 4Å: Chain A: L.130, P.152, G.154, S.155, G.156, K.157, S.158, T.159, L.289, R.298, L.300 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:L.130, A:G.154, A:S.155, A:G.156, A:K.157, A:S.158, A:S.158, A:S.158, A:T.159, A:T.159, A:R.298 Salt bridges: A:K.157 ADP.2: 12 residues within 4Å: Chain B: R.118, L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, L.289, L.300 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:L.130, B:S.155, B:G.156, B:K.157, B:S.158, B:T.159, B:T.159, A:R.215 Salt bridges: B:R.118, B:K.157 ADP.3: 13 residues within 4Å: Chain C: P.121, L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, L.289, R.298, L.300 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:L.130, C:G.154, C:S.155, C:G.156, C:K.157, C:S.158, C:T.159, C:R.298 Water bridges: C:L.300 Salt bridges: C:K.157 ADP.4: 12 residues within 4Å: Chain D: L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, E.184, L.289, R.298 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:L.130, D:G.154, D:S.155, D:G.156, D:K.157, D:S.158, D:T.159, D:T.159, D:E.184 Water bridges: D:R.118, D:T.153, D:K.157, D:E.184 Salt bridges: D:K.157 ADP.5: 12 residues within 4Å: Chain E: L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, L.289, R.298, L.300 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:L.130, E:G.154, E:S.155, E:G.156, E:K.157, E:S.158, E:T.159, E:T.159 Salt bridges: E:K.157 ADP.6: 12 residues within 4Å: Chain E: R.215 Chain F: L.130, P.152, T.153, G.154, S.155, G.156, K.157, S.158, T.159, L.289, L.300 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:L.130, F:G.154, F:S.155, F:G.156, F:K.157, F:S.158, F:T.159, F:T.159, E:R.215 Salt bridges: F:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCallum, M. et al., Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun (2019)

Release Date

2019-11-20

Peptides

Twitching motility pilus retraction ATPase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Twitching motility pilus retraction ATPase

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