SMTL ID : 6ok3.1

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.81, Q.111, C.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.81, A:C.112 Water bridges: A:N.81 SO4.9: 4 residues within 4Å: Chain B: G.182, G.184, V.185, D.186 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.184

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: S.486 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.486 EDO.3: 4 residues within 4Å: Chain A: M.89, A.92, E.93, R.126 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.126, A:R.126 EDO.4: 5 residues within 4Å: Chain A: A.97, K.98, Q.130, N.131, N.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.130, A:N.132 EDO.5: 5 residues within 4Å: Chain A: A.349, Q.382, G.383, F.384 Ligands: EDO.7 No protein-ligand interaction detected (PLIP) EDO.6: 1 residues within 4Å: Chain A: N.517 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.517 EDO.7: 3 residues within 4Å: Chain A: R.350, F.384 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.350 EDO.10: 3 residues within 4Å: Chain B: N.105, W.134, N.138 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.138, B:N.138 EDO.11: 4 residues within 4Å: Chain B: M.89, L.103, Y.123, R.126 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.123, B:R.126, B:R.126 EDO.12: 3 residues within 4Å: Chain B: Y.179, D.188, E.191 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.188 EDO.13: 4 residues within 4Å: Chain B: P.297, G.326, T.327, G.328 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.328 EDO.14: 1 residues within 4Å: Chain B: K.223 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.8: 7 residues within 4Å: Chain A: H.137, T.141, E.170, N.173, N.174, D.204, L.206 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.141, A:E.170, A:N.174 Water bridges: A:D.204, A:D.204

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.15: 5 residues within 4Å: Chain B: G.59, Q.64, K.90, E.93, Q.94 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of Sel1 repeat protein from Oxalobacter formigenes. To Be Published

Release Date

2020-04-15

Peptides

Sel1 repeat protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sel1 repeat protein