SMTL ID : 6ok8.1

Crystal structure of Staphylococcal nuclease variant Delta+PHS K127L at cryogenic temperature

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.21, D.40, T.41, E.43 Ligands: THP.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.21, A:D.40, A:T.41, H2O.1, H2O.1

1 x THP: THYMIDINE-3',5'-DIPHOSPHATE(Non-covalent)

THP.2: 11 residues within 4Å: Chain A: R.35, L.36, L.37, D.40, D.77, Y.79, R.81, L.83, Y.107, Y.109 Ligands: CA.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:R.35, A:L.83, A:Y.107 Hydrogen bonds: A:D.77, A:R.81, A:Y.109 Water bridges: A:T.22, A:E.43, A:E.43, A:K.110 Salt bridges: A:R.35, A:R.81 pi-Stacking: A:Y.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeliazkov, J.R. et al., Toward the computational design of protein crystals with improved resolution. Acta Crystallogr D Struct Biol (2019)

Release Date

2019-05-08

Peptides

Thermonuclease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermonuclease