- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 11 residues within 4Å:- Chain A: S.28, S.67, G.68, T.69, D.70
- Chain C: Y.100, P.101
- Chain D: H.62, Y.63, D.65, K.68
6 PLIP interactions:2 interactions with chain D, 1 interactions with chain C, 3 interactions with chain A- Water bridges: D:D.65, D:K.68, A:S.28
- Hydrogen bonds: C:Y.100, A:T.69, A:D.70
PEG.7: 7 residues within 4Å:- Chain C: Q.27, S.28, L.30, Y.31, S.32, Y.98, F.99
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.98
- Water bridges: C:S.32
PEG.8: 9 residues within 4Å:- Chain A: Q.27
- Chain C: D.1, V.2, Q.27, Q.96, F.99, Y.100, P.101, T.103
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:V.2, C:P.101, A:Q.27
- Water bridges: C:D.1, C:D.1, A:S.28
PEG.12: 8 residues within 4Å:- Chain D: I.54, G.58, T.61, T.72, I.73, S.74
- Ligands: EDO.9, EDO.10
No protein-ligand interaction detected (PLIP)PEG.13: 9 residues within 4Å:- Chain C: P.101, W.102, T.103, F.104
- Chain D: L.48, E.49, W.50, P.64
- Ligands: EDO.11
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:W.50, C:F.104, C:F.104
- Water bridges: D:T.66
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dosenovic, P. et al., Anti-idiotypic antibodies elicit anti-HIV-1-specific B cell responses. J.Exp.Med. (2019)
- Release Date
- 2019-07-24
- Peptides
- glVRC01 Light Chain: A
glVRC01 Heavy Chain: B
iv8 Light Chain: C
iv8 Heavy Chain: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
IC
JD
K
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dosenovic, P. et al., Anti-idiotypic antibodies elicit anti-HIV-1-specific B cell responses. J.Exp.Med. (2019)
- Release Date
- 2019-07-24
- Peptides
- glVRC01 Light Chain: A
glVRC01 Heavy Chain: B
iv8 Light Chain: C
iv8 Heavy Chain: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
IC
JD
K