SMTL ID : 6ome.1 (1 other biounit)

Crystal structure of a probable cytosol aminopeptidase (Leucine aminopeptidase, LAP) from Chlamydia trachomatis D/UW-3/Cx

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.1: 8 residues within 4Å: Chain A: K.272, A.355, E.356, G.357, R.358, L.383 Ligands: EDO.5, ZN.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.355, A:E.356, A:G.357, A:R.358, A:L.383

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: S.143, R.192, T.416, E.418, P.485, Y.486, R.496 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.143, A:S.143, A:R.192, A:E.418, A:E.418, A:R.496 EDO.4: 2 residues within 4Å: Chain A: D.265, F.505 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.265, A:L.506 EDO.5: 6 residues within 4Å: Chain A: D.354, R.358, L.383, T.384, G.385 Ligands: CO3.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.354, A:R.358, A:G.385 Water bridges: A:R.358, A:A.386

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: G.330, S.331 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.331

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 6 residues within 4Å: Chain A: K.272, D.277, D.295, E.356 Ligands: CO3.1, ZN.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.277, A:D.295, A:E.356, H2O.5 ZN.7: 4 residues within 4Å: Chain A: D.277, D.354, E.356 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.277, A:D.354, A:D.354, A:E.356, H2O.5

4 x NA: SODIUM ION(Non-functional Binders)

NA.8: 1 residues within 4Å: Chain A: E.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.186 NA.9: 4 residues within 4Å: Chain A: A.215, F.218, A.219, L.221 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.215, A:L.221 NA.10: 3 residues within 4Å: Chain A: D.282 Ligands: CL.12, LEU.14 3 PLIP interactions: 2 Ligand-Ligand interactions, 1 interactions with chain A Hydrogen bonds: L.14, L.14 Water bridges: A:D.282 NA.11: 3 residues within 4Å: Chain A: A.474, G.475, Y.478 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.474, A:Y.478

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.12: 3 residues within 4Å: Chain A: D.282 Ligands: NA.10, LEU.14 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain A: R.376 Ligand excluded by PLIP

1 x LEU: LEUCINE(Non-covalent)

LEU.14: 3 residues within 4Å: Chain A: D.282 Ligands: NA.10, CL.12 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a probable cytosol aminopeptidase (Leucine aminopeptidase, LAP) from Chlamydia trachomatis D/UW-3/Cx. To Be Published

Release Date

2019-05-01

Peptides

Probable cytosol aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable cytosol aminopeptidase

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