SMTL ID : 6omo.1

Human BMP6 homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain B: C.3, E.35, S.37, P.39, L.40, M.44, N.45, C.103 No protein-ligand interaction detected (PLIP)

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 5 residues within 4Å: Chain A: K.92, Y.93, R.94 Chain B: N.48 Ligands: PEG.9 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.48, B:N.48 IPA.3: 3 residues within 4Å: Chain A: A.76, I.77, S.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.78, A:S.78 IPA.4: 3 residues within 4Å: Chain A: A.23, P.24, S.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.78 IPA.5: 3 residues within 4Å: Chain A: P.39, N.41 Ligands: IPA.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.39 Hydrogen bonds: A:N.41 IPA.6: 5 residues within 4Å: Chain A: A.2, P.39, N.41, M.44 Ligands: IPA.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.2, A:P.39, A:N.41 IPA.8: 5 residues within 4Å: Chain A: N.48, I.51 Chain B: W.17, Y.93, M.96 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.17, B:Y.93, A:I.51

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: N.41, A.42, N.45, A.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.41, A:A.46, A:A.46

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 4 residues within 4Å: Chain A: Y.93 Chain B: H.43, N.48 Ligands: IPA.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.43 PEG.10: 1 residues within 4Å: Chain B: E.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seeherman, H.J. et al., A BMP/activin A chimera is superior to native BMPs and induces bone repair in nonhuman primates when delivered in a composite matrix. Sci Transl Med (2019)

Release Date

2019-05-08

Peptides

Bone morphogenetic protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Bone morphogenetic protein 6